[sciurius]

When you write

[Eb][/][/][/]Take me to Your kingdom

you tell ChordPro that the last [/] is the chord to put above the syllable "Take". Hence the indentation.

You can try to put the slashes where they belong, e.g.:

[Eb]Take [/]me to [/]Your king[/]dom

or use something similar to:

{comment:[Eb] [/] [/] [/]}
Take me to Your kingdom